The phylogenetic handbook :
The phylogenetic handbook : a practical approach to phylogenetic analysis and hypothesis testing /
edited by Philippe Lemey, Marco Salemi, Anne-Mieke Vandamme.
- 2nd ed.
- Cambridge ; New York : Cambridge University Press, 2009.
- xxvi, 723 p. : il. (alg. col.) ; 26 cm.
First ed. published with subtitle: A practical approach to DNA and protein phylogeny / edited by Marco Salemi and Anne-Mieke Vandamme. 2003.
Incluye referencias bibliográficas e índice (p. 672-708).
Basic concepts of molecular evolution / Sequence databases and database searching : Theory / Practice / Multiple sequence alignment : Theory / Practice / Genetic distances and nucleotide substitution models : Theory / Practice / Phylogenetic inference based on distance methods : Theory / Practice / Phylogenetic inference using maximum likelihood methods : Theory / Practice / Heiko A. Schmidt, Bayesian phylogenetic analysis using MrBayes : Theory / Practice / Phylogeny inference based on parsimony and other methods using PAUP* : Theory / Practice / Phylogenetic analysis using protein sequences : Theory / Practices / Practice / Molecular clock analysis : Theory / Practice / Testing tree topologies : Theory / Practice / Natural selection and adaptation of molecular sequences / Estimating selection pressures on alignments of coding sequences : Theory / Practice / Introduction to recombination detection / Detecting and characterizing individual recombination events : Theory / Practice / coalescent : population genetic inference using genealogies / Bayesian evolutionary analysis by sampling trees : Theory / Practice / Lamarc : estimating population genetic parameters from molecular data : Theory / Practice / Assessing substitution saturation with Dambe : Theory / Practice / Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory / Practice / Anne-Mieke Vandamme -- Guy Bottu -- Marc Van Ranst, Philippe Lemey -- Des Higgins, Philippe Lemey -- Des Higgins, Philippe Lemey -- Korbinian Strimmer, Arndt von Haeseler -- Marco Salemi -- Yves Van de Peer -- Marco Salemi -- Heiko A. Schmidt, Arndt von Haesler -- Arndt von Haeseler -- Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- David L. Swofford, Jack Sullivan -- David L. Swofford, Jack Sullivan -- Fred R. Opperdoes -- Fred R. Opperdoes, Philippe Lemey -- David Posada -- David Posada -- Philippe Lemey, David Posada -- Philippe Lemey, David Posada -- Heiko A. Schmidt -- Heiko A. Schmidt -- Oliver G. Pybus, Beth Shapiro -- Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Philippe Lemey, David Posada -- Mika Salminen, Darren Martin -- Mika Salminen, Darren Martin -- Allen Rodrigo -- Alexei J. Drummond, Andrew Rambaut -- Alexei J. Drummond, Andrew Rambaut -- Mary K. Kuhner -- Mary K. Kuhner -- Xuhua Xia -- Xuhua Xia, Philippe Lemey -- Vincent Moulton, Katharina T. Huber -- Vincent Moulton, Katharina T. Huber. Section 1 Introduction : Section II Data preparation : Section III Phylogenetic inference : Section IV Testing models and trees : Theory / Section V Molecular adaptation : Section VI Recombination : Section VII Population genetics : The Section VIII Additional topics :
9780521877107 (hbk.) 0521877105 (hbk.) 9780521730716 (pbk.) 0521730716 (pbk.)
2009464132
Phylogeny--Molecular aspects--Data processing.
Phylogeny--Computer programs.
Molecular evolution--Data processing.
Nucleotides--Phylogeny--Data processing.
Proteins--Phylogeny--Data processing.
DNA--Phylogeny--Data processing.
Models, Genetic.
Phylogeny.
Evolución molecular--Procesamiento de datos.
QP624 P49 2009
576.88
First ed. published with subtitle: A practical approach to DNA and protein phylogeny / edited by Marco Salemi and Anne-Mieke Vandamme. 2003.
Incluye referencias bibliográficas e índice (p. 672-708).
Basic concepts of molecular evolution / Sequence databases and database searching : Theory / Practice / Multiple sequence alignment : Theory / Practice / Genetic distances and nucleotide substitution models : Theory / Practice / Phylogenetic inference based on distance methods : Theory / Practice / Phylogenetic inference using maximum likelihood methods : Theory / Practice / Heiko A. Schmidt, Bayesian phylogenetic analysis using MrBayes : Theory / Practice / Phylogeny inference based on parsimony and other methods using PAUP* : Theory / Practice / Phylogenetic analysis using protein sequences : Theory / Practices / Practice / Molecular clock analysis : Theory / Practice / Testing tree topologies : Theory / Practice / Natural selection and adaptation of molecular sequences / Estimating selection pressures on alignments of coding sequences : Theory / Practice / Introduction to recombination detection / Detecting and characterizing individual recombination events : Theory / Practice / coalescent : population genetic inference using genealogies / Bayesian evolutionary analysis by sampling trees : Theory / Practice / Lamarc : estimating population genetic parameters from molecular data : Theory / Practice / Assessing substitution saturation with Dambe : Theory / Practice / Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory / Practice / Anne-Mieke Vandamme -- Guy Bottu -- Marc Van Ranst, Philippe Lemey -- Des Higgins, Philippe Lemey -- Des Higgins, Philippe Lemey -- Korbinian Strimmer, Arndt von Haeseler -- Marco Salemi -- Yves Van de Peer -- Marco Salemi -- Heiko A. Schmidt, Arndt von Haesler -- Arndt von Haeseler -- Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- David L. Swofford, Jack Sullivan -- David L. Swofford, Jack Sullivan -- Fred R. Opperdoes -- Fred R. Opperdoes, Philippe Lemey -- David Posada -- David Posada -- Philippe Lemey, David Posada -- Philippe Lemey, David Posada -- Heiko A. Schmidt -- Heiko A. Schmidt -- Oliver G. Pybus, Beth Shapiro -- Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Philippe Lemey, David Posada -- Mika Salminen, Darren Martin -- Mika Salminen, Darren Martin -- Allen Rodrigo -- Alexei J. Drummond, Andrew Rambaut -- Alexei J. Drummond, Andrew Rambaut -- Mary K. Kuhner -- Mary K. Kuhner -- Xuhua Xia -- Xuhua Xia, Philippe Lemey -- Vincent Moulton, Katharina T. Huber -- Vincent Moulton, Katharina T. Huber. Section 1 Introduction : Section II Data preparation : Section III Phylogenetic inference : Section IV Testing models and trees : Theory / Section V Molecular adaptation : Section VI Recombination : Section VII Population genetics : The Section VIII Additional topics :
9780521877107 (hbk.) 0521877105 (hbk.) 9780521730716 (pbk.) 0521730716 (pbk.)
2009464132
Phylogeny--Molecular aspects--Data processing.
Phylogeny--Computer programs.
Molecular evolution--Data processing.
Nucleotides--Phylogeny--Data processing.
Proteins--Phylogeny--Data processing.
DNA--Phylogeny--Data processing.
Models, Genetic.
Phylogeny.
Evolución molecular--Procesamiento de datos.
QP624 P49 2009
576.88
