TY  - BOOK
AU  - Lemey,Philippe
AU  - Salemi,Marco
AU  - Vandamme,Anne-Mieke
TI  - The phylogenetic handbook: a practical approach to phylogenetic analysis and hypothesis testing 
SN  - 9780521877107 (hbk.)
AV  - QP624 P49 2009 
U1  - 576.88 22
PY  - 2009///
CY  - Cambridge, New York
PB  - Cambridge University Press
KW  - Phylogeny
KW  - Molecular aspects
KW  - Data processing
KW  - Computer programs
KW  - Molecular evolution
KW  - Nucleotides
KW  - Proteins
KW  - DNA
KW  - Models, Genetic
KW  - Evolución molecular
KW  - Procesamiento de datos
N1  - First ed. published with subtitle: A practical approach to DNA and protein phylogeny / edited by Marco Salemi and Anne-Mieke Vandamme. 2003; Incluye referencias bibliográficas e índice (p. 672-708); Section 1 Introduction; Basic concepts of molecular evolution; Anne-Mieke Vandamme --; Section II Data preparation; Sequence databases and database searching : Theory; Guy Bottu --; Practice; Marc Van Ranst; Philippe Lemey --; Multiple sequence alignment : Theory; Des Higgins; Philippe Lemey --; Practice; Des Higgins; Philippe Lemey --; Section III Phylogenetic inference; Genetic distances and nucleotide substitution models : Theory; Korbinian Strimmer; Arndt von Haeseler --; Practice; Marco Salemi --; Phylogenetic inference based on distance methods : Theory; Yves Van de Peer --; Practice; Marco Salemi --; Phylogenetic inference using maximum likelihood methods : Theory; Heiko A. Schmidt; Arndt von Haesler --; Practice / Heiko A. Schmidt; Arndt von Haeseler --; Bayesian phylogenetic analysis using MrBayes : Theory; Fredrik Ronquist; Paul van der Mark; John P. Huelsenbeck --; Practice; Fredrik Ronquist; Paul van der Mark; John P. Huelsenbeck --; Phylogeny inference based on parsimony and other methods using PAUP* : Theory; David L. Swofford; Jack Sullivan --; Practice; David L. Swofford; Jack Sullivan --; Phylogenetic analysis using protein sequences : Theory; Fred R. Opperdoes --; Practices; Fred R. Opperdoes; Philippe Lemey --; Section IV Testing models and trees : Theory; David Posada --; Practice; David Posada --; Molecular clock analysis : Theory; Philippe Lemey; David Posada --; Practice; Philippe Lemey; David Posada --; Testing tree topologies : Theory; Heiko A. Schmidt --; Practice; Heiko A. Schmidt --; Section V Molecular adaptation; Natural selection and adaptation of molecular sequences; Oliver G. Pybus; Beth Shapiro --; Estimating selection pressures on alignments of coding sequences : Theory; Sergei L. Kosakovsky Pond; Art F.Y. Poon; Simon D.W. Frost --; Practice; Sergei L. Kosakovsky Pond; Art F.Y. Poon; Simon D.W. Frost --; Section VI Recombination; Introduction to recombination detection; Philippe Lemey; David Posada --; Detecting and characterizing individual recombination events : Theory; Mika Salminen; Darren Martin --; Practice; Mika Salminen; Darren Martin --; Section VII Population genetics : The; coalescent : population genetic inference using genealogies; Allen Rodrigo --; Bayesian evolutionary analysis by sampling trees : Theory; Alexei J. Drummond; Andrew Rambaut --; Practice; Alexei J. Drummond; Andrew Rambaut --; Lamarc : estimating population genetic parameters from molecular data : Theory; Mary K. Kuhner --; Practice; Mary K. Kuhner --; Section VIII Additional topics; Assessing substitution saturation with Dambe : Theory; Xuhua Xia --; Practice; Xuhua Xia; Philippe Lemey --; Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory; Vincent Moulton; Katharina T. Huber --; Practice; Vincent Moulton; Katharina T. Huber
ER  -