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001 978-3-031-20414-2
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008 230203s2023 sz | s |||| 0|eng d
020 _a9783031204142
_9978-3-031-20414-2
050 4 _aQH324.2-324.25
072 7 _aUY
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082 0 4 _a570.285
_223
100 1 _aHaubold, Bernhard.
_eauthor.
_4aut
_4http://id.loc.gov/vocabulary/relators/aut
245 1 0 _aBioinformatics for Evolutionary Biologists
_h[electronic resource] :
_bA Problems Approach /
_cby Bernhard Haubold, Angelika Börsch-Haubold.
250 _a2nd ed. 2023.
264 1 _aCham :
_bSpringer International Publishing :
_bImprint: Springer,
_c2023.
300 _aIX, 411 p. 155 illus., 46 illus. in color.
_bonline resource.
336 _atext
_btxt
_2rdacontent
337 _acomputer
_bc
_2rdamedia
338 _aonline resource
_bcr
_2rdacarrier
347 _atext file
_bPDF
_2rda
500 _aAcceso multiusuario
505 0 _aPart I Problems -- 1 The Unix Command Line -- 1.1 Getting Started -- 1.2 Files, Directories, and Programs.-1.3 Scripts -- 2 Optimal Alignment -- 2.1 Keeping Score -- 2.2 Construction -- 2.3 Application -- 3 Exact Matching -- 3.1 Keyword Trees -- 3.2 Suffix Trees -- 3.3 Suffix Arrays -- 3.4 Text Compression -- 4 Fast Alignment -- 4.1 Global -- 4.2 Local -- 4.3 Glocal -- 4.4 Assembly -- 4.5 Multiple Sequences -- 5 Evolution Between Species: Phylogeny -- 5.1 Trees of Life -- 5.2 Rooted Trees -- 5.3 Unrooted Trees -- 6 Evolution within Populations -- 6.1 Descent from One or Two Parents -- 6.2 The Coalescent -- 7 Interrogating and Storing Data -- 7.1 Statistics -- 7.2 Relational Databases -- Part II Answers. -- 1 The Unix Command Line -- 1.1 Getting Started -- 1.2 Files, Directories, and Programs -- 1.3 Scripts -- 2 Optimal Alignment -- 2.1 Keeping Score -- 2.2 Construction -- 2.3 Application -- 3 Exact Matching -- 3.1 Keyword Trees -- 3.2 Suffix Trees -- 3.3 Suffix Arrays -- 3.4 Text Compression -- 4 Fast Alignment -- 4.1 Global -- 4.2 Local -- 4.3 Glocal -- 4.4 Assembly -- 4.5 Multiple Sequences -- 5 Evolution Between Species: Phylogeny -- 5.1 Trees of Life -- 5.2 Rooted Trees -- 5.3 Unrooted Trees -- 6 Evolution within Populations -- 6.1 Descent from One or Two Parents -- 6.2 The Coalescent -- 7 Interrogating and Storing Data -- 7.1 Statistics -- 7.2 Relational Databases -- A. Unix Guide -- B. Programs -- B.1 Own -- B.2 Biobox -- B.3 Third-Party -- References -- Index.
520 _aThis self-contained textbook covers fundamental aspects of sequence analysis with special emphasis on evolutionary biology, including sequence alignment, exact matching, phylogeny reconstruction, and coalescent simulation. It addresses these topics through a series of over 800 computer problems, ranging from elementary to research level, to enable learning by doing. Students solve the problems in the same computational environment used for decades in science - the Unix command line. This is available on all four major operating systems for PCs: Windows, macOS, chromeOS, and Linux. To learn using this powerful system, students analyze sample sequence data by applying generic tools, bioinformatics software, and over 50 programs specifically written for this course and available via GitHub. The solutions for all problems are included, making the book ideal for self-study. Problems are grouped into sections headed by an introduction and a list of new terms. By using practical computing to explore sequence data in an evolutionary context, the book enables readers to tackle their own computational problems.
541 _fUABC ;
_cPerpetuidad
650 0 _aBioinformatics.
650 0 _aEvolution (Biology).
650 1 4 _aBioinformatics.
650 2 4 _aEvolutionary Biology.
650 2 4 _aComputational and Systems Biology.
700 1 _aBörsch-Haubold, Angelika.
_eauthor.
_4aut
_4http://id.loc.gov/vocabulary/relators/aut
710 2 _aSpringerLink (Online service)
773 0 _tSpringer Nature eBook
776 0 8 _iPrinted edition:
_z9783031204135
776 0 8 _iPrinted edition:
_z9783031204159
776 0 8 _iPrinted edition:
_z9783031204166
856 4 0 _zLibro electrónico
_uhttp://libcon.rec.uabc.mx:2048/login?url=https://doi.org/10.1007/978-3-031-20414-2
912 _aZDB-2-SBL
912 _aZDB-2-SXB
942 _cLIBRO_ELEC
999 _c260363
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