The phylogenetic handbook : a practical approach to phylogenetic analysis and hypothesis testing / edited by Philippe Lemey, Marco Salemi, Anne-Mieke Vandamme.

Colaborador(es): Lemey, Philippe | Salemi, Marco, 1968- | Vandamme, Anne-Mieke, 1960-Tipo de material: TextoTextoDetalles de publicación: Cambridge ; New York : Cambridge University Press, 2009Edición: 2nd edDescripción: xxvi, 723 p. : il. (alg. col.) ; 26 cmISBN: 9780521877107 (hbk.); 0521877105 (hbk.); 9780521730716 (pbk.); 0521730716 (pbk.)Tema(s): Phylogeny -- Molecular aspects -- Data processing | Phylogeny -- Computer programs | Molecular evolution -- Data processing | Nucleotides -- Phylogeny -- Data processing | Proteins -- Phylogeny -- Data processing | DNA -- Phylogeny -- Data processing | Models, Genetic | Phylogeny | Evolución molecular -- Procesamiento de datosClasificación CDD: 576.88 Clasificación LoC:QP624 P49 2009
Contenidos:
Section 1 Introduction : Basic concepts of molecular evolution / Anne-Mieke Vandamme -- Section II Data preparation : Sequence databases and database searching : Theory / Guy Bottu -- Practice / Marc Van Ranst, Philippe Lemey -- Multiple sequence alignment : Theory / Des Higgins, Philippe Lemey -- Practice / Des Higgins, Philippe Lemey -- Section III Phylogenetic inference : Genetic distances and nucleotide substitution models : Theory / Korbinian Strimmer, Arndt von Haeseler -- Practice / Marco Salemi -- Phylogenetic inference based on distance methods : Theory / Yves Van de Peer -- Practice / Marco Salemi -- Phylogenetic inference using maximum likelihood methods : Theory / Heiko A. Schmidt, Arndt von Haesler -- Practice / Heiko A. Schmidt, Arndt von Haeseler -- Bayesian phylogenetic analysis using MrBayes : Theory / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Practice / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Phylogeny inference based on parsimony and other methods using PAUP* : Theory / David L. Swofford, Jack Sullivan -- Practice / David L. Swofford, Jack Sullivan -- Phylogenetic analysis using protein sequences : Theory / Fred R. Opperdoes -- Practices / Fred R. Opperdoes, Philippe Lemey -- Section IV Testing models and trees : Theory / David Posada -- Practice / David Posada -- Molecular clock analysis : Theory / Philippe Lemey, David Posada -- Practice / Philippe Lemey, David Posada -- Testing tree topologies : Theory / Heiko A. Schmidt -- Practice / Heiko A. Schmidt -- Section V Molecular adaptation : Natural selection and adaptation of molecular sequences / Oliver G. Pybus, Beth Shapiro -- Estimating selection pressures on alignments of coding sequences : Theory / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Practice / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Section VI Recombination : Introduction to recombination detection / Philippe Lemey, David Posada -- Detecting and characterizing individual recombination events : Theory / Mika Salminen, Darren Martin -- Practice / Mika Salminen, Darren Martin -- Section VII Population genetics : The coalescent : population genetic inference using genealogies / Allen Rodrigo -- Bayesian evolutionary analysis by sampling trees : Theory / Alexei J. Drummond, Andrew Rambaut -- Practice / Alexei J. Drummond, Andrew Rambaut -- Lamarc : estimating population genetic parameters from molecular data : Theory / Mary K. Kuhner -- Practice / Mary K. Kuhner -- Section VIII Additional topics : Assessing substitution saturation with Dambe : Theory / Xuhua Xia -- Practice / Xuhua Xia, Philippe Lemey -- Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory / Vincent Moulton, Katharina T. Huber -- Practice / Vincent Moulton, Katharina T. Huber.
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Acervo General QP624 P49 2009 (Browse shelf(Abre debajo)) 1 Disponible ENS070408

First ed. published with subtitle: A practical approach to DNA and protein phylogeny / edited by Marco Salemi and Anne-Mieke Vandamme. 2003.

Incluye referencias bibliográficas e índice (p. 672-708).

Section 1 Introduction : Basic concepts of molecular evolution / Anne-Mieke Vandamme -- Section II Data preparation : Sequence databases and database searching : Theory / Guy Bottu -- Practice / Marc Van Ranst, Philippe Lemey -- Multiple sequence alignment : Theory / Des Higgins, Philippe Lemey -- Practice / Des Higgins, Philippe Lemey -- Section III Phylogenetic inference : Genetic distances and nucleotide substitution models : Theory / Korbinian Strimmer, Arndt von Haeseler -- Practice / Marco Salemi -- Phylogenetic inference based on distance methods : Theory / Yves Van de Peer -- Practice / Marco Salemi -- Phylogenetic inference using maximum likelihood methods : Theory / Heiko A. Schmidt, Arndt von Haesler -- Practice / Heiko A. Schmidt, Arndt von Haeseler -- Bayesian phylogenetic analysis using MrBayes : Theory / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Practice / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Phylogeny inference based on parsimony and other methods using PAUP* : Theory / David L. Swofford, Jack Sullivan -- Practice / David L. Swofford, Jack Sullivan -- Phylogenetic analysis using protein sequences : Theory / Fred R. Opperdoes -- Practices / Fred R. Opperdoes, Philippe Lemey -- Section IV Testing models and trees : Theory / David Posada -- Practice / David Posada -- Molecular clock analysis : Theory / Philippe Lemey, David Posada -- Practice / Philippe Lemey, David Posada -- Testing tree topologies : Theory / Heiko A. Schmidt -- Practice / Heiko A. Schmidt -- Section V Molecular adaptation : Natural selection and adaptation of molecular sequences / Oliver G. Pybus, Beth Shapiro -- Estimating selection pressures on alignments of coding sequences : Theory / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Practice / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Section VI Recombination : Introduction to recombination detection / Philippe Lemey, David Posada -- Detecting and characterizing individual recombination events : Theory / Mika Salminen, Darren Martin -- Practice / Mika Salminen, Darren Martin -- Section VII Population genetics : The coalescent : population genetic inference using genealogies / Allen Rodrigo -- Bayesian evolutionary analysis by sampling trees : Theory / Alexei J. Drummond, Andrew Rambaut -- Practice / Alexei J. Drummond, Andrew Rambaut -- Lamarc : estimating population genetic parameters from molecular data : Theory / Mary K. Kuhner -- Practice / Mary K. Kuhner -- Section VIII Additional topics : Assessing substitution saturation with Dambe : Theory / Xuhua Xia -- Practice / Xuhua Xia, Philippe Lemey -- Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory / Vincent Moulton, Katharina T. Huber -- Practice / Vincent Moulton, Katharina T. Huber.

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